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We are still working on this page. Tools will be added and opened gradually until the end of August, the date of the first complete version of this web site. You can find more about the schedule in "what's next ?" or click on the corresponding red bullets.
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Search sequences, structure, mutations, function, references

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Sequences
Structures
Mutations
Functions
References
Taxonomy
 
 
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Search U.I.C.
Search Engines
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Sequence search in the serine protease web site

 

Search a sequence by keyword protease, organism or ac code... and make a set.

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Sequence search in Genbank at NCBI

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Search Field: Mode:
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Sequence search in PIR , (code identifier at PIR)

  You may use the original form at PIR if the form below does not work.
Search in all fields
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Sequence search from the WWW SRS at Expasy (SIB, Geneva)

You may use the original form at ExPASy if the form below does not work.
Combine searches with Append wildcard '*' to words.




Include fields
in output
Entry List in chunks of
Sequence Format
Display in
list
table
Use view
Retrieve set of
   
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Structure search from the PDB at RCSB

  You may use the original form at RCSB if the forms below do not work.
Search from a PDB ID:
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Search from a keyword
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  Search from extended fields:
 
Citation Author:
Authors of primary citation only!
Contains Chain Type:
  Yes     No     ignore     Yes     No     ignore  
Protein: DNA:
Enzyme: RNA:
Glycoprotein:   DNA/RNA hybrid:
Carbohydrate:
Compound Information:
PDB HEADER:
Exp. Technique:
Text Search:
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Mutation catalog in the serine protease web site

release Mutation Catalog by position (menu: position)
Input: reference, position
Output: mutations, references
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Search mutations at EBI

 
Search in the MUTRES database
Combine searches with Append wildcard '*' to words.



Include fields
in output
Entry List in chunks of
 
Display in
list
table
Use view

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Function catalogs

Biomedical and Biotechnological Aspects of Peptidases from MEROPS
Physiologic function description and pharmacologic target. Companies need a license to use this facility from Rawlings N.D.
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Go to page bottom Knock out of gene coding for serine proteases (menu: knock-out)
Description of end developmental stage if lethal.
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  Protein Annotator Assistant : hypothesise the function(s) of a protein sequence at EBI
Enter protein names in the space below, each on a new line, or cut and paste them from FASTA or BLAST output. If pasting from a BLAST/FASTA output, choose column that names the proteins of interest:
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References from the National Library of Medicine

ENTREZ for:

Number of documents to display per page: Entrez Date limit:
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MEDLINE Search Field: Mode:

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Taxonomy at NCBI

This is a searchable index. You can enter the name of superspecific taxa (e.g., Porifera) or the name of a particular organism (e.g., Thalarctos maritimus for the polar bear or polar bear itself).
Query:
Use query string as : complete match wild card search set of tokens
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Go to page bottom  Search Engines or search directly in Univeristies, Institutions and companies
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Examples
Engine
Meta-Engine
at Meta-Crawler
any   all   phrase    Per page: Per Source:
Meta-Engines, all-in-one
at Seach-It-All
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Listes
Engines Meta-Engines Meta-Engines: all-in-one
AOL NetFind Go2Net / MetaCrawler Search-It-All
AltaVista SavvySearch Skworm
Ask Jeeves Dogpile OneSeek
Direct Hit Inference Find Proteus
Excite ProFusion Search Spaniel
FAST Search Internet Sleuth PureSearch
Go / Infoseek Mamma All4one Search Machine
GoTo Dataware Instantseek
Google ByteSearch  
HotBot Debriefing  
Inktomi HuskySearch  
LookSmart WebInfoSearch  
Lycos 1Blink  
MSN Search Chubba  
Netscape Search Supercrawler.com  
Northern Light Cyber 411  
Open Directory SearchBuddy  
RealNames OneSearch.com  
Snap Pluribus  
WebCrawler    
Yahoo    
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Description Engine specificities are described on Search Engine Watch and how they work is explain here.
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Go to the Washington University in St Louis
Go to the School of MedicineGo to the Department of Biochemistry and Molecular Biophysics


Thierry Rose, PhD and Enrico Di Cera, MD
Department of Biochemistry and Molecular Biophysics
Washington University School of Medicine
Saint Louis, MO, U.S.A.

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