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Family ID
AC ID
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Select a set from the entire sequence list

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Select a set from the entire hidden list by keywords
Protease, Organism, ac codes...
 
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3

Evaluate identity and similarity scores between one sequence versus others
Choose the appropriate set of aligned sequence
Select a list sequences separated spaces, the first used as query
Select the window to compute the scores from residue to with the following reference for numbering (heavy chain of chymotrypsin by default)

Evaluate the similarity score with the selected substitution matrix

 
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4

Select a set of sequences close to a sequence query
Choose the appropriate set of aligned sequence
Select a sequence as reference
Select the window to compute the scores from residue to with the following reference for numbering (heavy chain of chymotrypsin by default)
Minimal score of identity % or number of sequences with the best score of similarity
with the selected substitution matrix


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release
5

Select a set of sequences from a motif
Choose a set of sequences
Range of motif search from to
with the following reference for numbering (heavy chain of chymotrypsin by default)
Enter the sequence of amino acids as reference

Select substitution matrix Allow gaps, gap openning penalty , gap extension penalty .


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Select a set of sequences with specified constraints
Choose the appropriate set of aligned sequence
Select a sequence as reference .

positions and constraints separated by spaces (ex: 57 H 102 D 195 S 189 D 225 Y)



 
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Go to page top 7 Perform logical operations on sets
Set pad 1
release

Set pad 2
release
Set pad 3
release
Set pad 4
release

Set pad 5
release

  Set Operation Set
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Read a set from a local file (in your computer) note :T2,G2 equivalent
 

Enter the file name or find it with the browser

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Save a set in a temporary file in the server (available during a 6h-period)
 

Enter the file name or find it with the browser

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Go to the Washington University in St Louis
Go to the School of MedicineGo to the Department of Biochemistry and Molecular Biophysics


Thierry Rose, PhD and Enrico Di Cera, MD
Department of Biochemistry and Molecular Biophysics
Washington University School of Medicine
Saint Louis, MO, U.S.A.

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